Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
INTS10

Cell type

Cell type Class
Neural
Cell type
SH-SY5Y
Primary Tissue
Brain
Tissue Diagnosis
Neuroblastoma

Attributes by original data submitter

Sample

source_name
SHSY5Y
cell line
SHSY5Y
cell type
neuroblastoma
genotype
wt
treatment
No treatment
chip antibody
INTS10 (proteintech 15271-1-AP)
geo_loc_name
missing
collection_date
missing

Sequenced DNA Library

library_name
GSM7246591
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei (Covaris S220), and protein-DNA complexes were isolated with antibody-conjugated Dynabeads NEBNext Ultra II DNA Library Prep Kit for Illumina (New England Biolabs Inc.)

Sequencing Platform

instrument_model
NextSeq 2000

hg38

Number of total reads
28060394
Reads aligned (%)
98.6
Duplicates removed (%)
20.9
Number of peaks
4333 (qval < 1E-05)

hg19

Number of total reads
28060394
Reads aligned (%)
98.4
Duplicates removed (%)
20.9
Number of peaks
4329 (qval < 1E-05)

Base call quality data from DBCLS SRA